J3_8VTV_062

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_062 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0787

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VTV|1|2A|G|1424
8VTV|1|2A|G|1425
8VTV|1|2A|G|1426
8VTV|1|2A|A|1427
8VTV|1|2A|C|1428
8VTV|1|2A|G|1429
*
8VTV|1|2A|C|1564
8VTV|1|2A|C|1565
*
8VTV|1|2A|G|1568
8VTV|1|2A|A|1569
8VTV|1|2A|A|1570
8VTV|1|2A|A|1571
8VTV|1|2A|A|1572
8VTV|1|2A|G|1573
8VTV|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2