J3_8VTW_024

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_024 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.0399

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VTW|1|2A|U|2091
8VTW|1|2A|U|2092
8VTW|1|2A|G|2093
*
8VTW|1|2A|C|2196
8VTW|1|2A|U|2197
8VTW|1|2A|A|2198
8VTW|1|2A|A|2199
8VTW|1|2A|C|2200
*
8VTW|1|2A|G|2223
8VTW|1|2A|G|2224
8VTW|1|2A|A|2225
8VTW|1|2A|C|2226
8VTW|1|2A|A|2227
8VTW|1|2A|G|2228

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9