J3_8VTW_047

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

8VTW|1|1B|U|14, 8VTW|1|1B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8VTW|1|1B|C|11
8VTW|1|1B|C|12
8VTW|1|1B|A|13
8VTW|1|1B|U|14
8VTW|1|1B|A|15
8VTW|1|1B|G|16
*
8VTW|1|1B|C|68
8VTW|1|1B|G|69
*
8VTW|1|1B|U|108
8VTW|1|1B|C|109
8VTW|1|1B|G|110

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1Z

50S ribosomal protein L25