J3_8VTW_062

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

8VTW|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_062 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0735

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|G|1344
8VTW|1|2A|C|1345
8VTW|1|2A|G|1346
8VTW|1|2A|G|1347
8VTW|1|2A|G|1348
8VTW|1|2A|A|1349
8VTW|1|2A|C|1350
*
8VTW|1|2A|G|1381
8VTW|1|2A|G|1382
8VTW|1|2A|C|1383
8VTW|1|2A|A|1384
8VTW|1|2A|G|1385
*
8VTW|1|2A|C|1402
8VTW|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23