J3_8VTX_016

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTX_016 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.0727

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01343.1

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VTX|1|1a|C|1063
8VTX|1|1a|G|1064
8VTX|1|1a|U|1065
8VTX|1|1a|C|1066
8VTX|1|1a|A|1067
8VTX|1|1a|G|1068
*
8VTX|1|1a|C|1107
8VTX|1|1a|G|1108
8VTX|1|1a|C|1109
8VTX|1|1a|A|1110
8VTX|1|1a|A|1111
8VTX|1|1a|C|1112
8VTX|1|1a|C|1113
*
8VTX|1|1a|G|1187
8VTX|1|1a|A|1188
8VTX|1|1a|C|1189
8VTX|1|1a|G|1190
8VTX|1|1a|A|1191
8VTX|1|1a|C|1192
8VTX|1|1a|G|1193

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1c

30S ribosomal protein S3

Chain 1e

30S ribosomal protein S5

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z