J3_8VTX_019

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8VTX|1|2A|G|686, 8VTX|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTX_019 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0517

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

8VTX|1|2A|C|683
8VTX|1|2A|G|684
8VTX|1|2A|A|685
8VTX|1|2A|G|686
8VTX|1|2A|C|687
8VTX|1|2A|U|688
8VTX|1|2A|A|689
*
8VTX|1|2A|U|773
8VTX|1|2A|A|774
8VTX|1|2A|G|775
*
8VTX|1|2A|C|791
8VTX|1|2A|G|792
8VTX|1|2A|A|793
8VTX|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2