J3_8VTY_003

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTY_003 not in the Motif Atlas

Geometric match to J3_1MMS_001

Geometric discrepancy: 0.1667

The information below is about J3_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8VTY|1|1A|G|1055
8VTY|1|1A|G|1056
8VTY|1|1A|A|1057
*
8VTY|1|1A|U|1081
8VTY|1|1A|U|1082
8VTY|1|1A|U|1083
8VTY|1|1A|A|1084
8VTY|1|1A|A|1085
8VTY|1|1A|A|1086
8VTY|1|1A|G|1087
*
8VTY|1|1A|C|1102
8VTY|1|1A|A|1103
8VTY|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36