J3_8VTY_043

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTY_043 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0647

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VTY|1|1A|G|1424
8VTY|1|1A|G|1425
8VTY|1|1A|G|1426
8VTY|1|1A|A|1427
8VTY|1|1A|C|1428
8VTY|1|1A|G|1429
*
8VTY|1|1A|C|1564
8VTY|1|1A|C|1565
*
8VTY|1|1A|G|1568
8VTY|1|1A|A|1569
8VTY|1|1A|A|1570
8VTY|1|1A|A|1571
8VTY|1|1A|A|1572
8VTY|1|1A|G|1573
8VTY|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2