J3_8VTY_059

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8VTY|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTY_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0552

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8VTY|1|2A|C|297
8VTY|1|2A|G|298
8VTY|1|2A|A|299
8VTY|1|2A|A|300
8VTY|1|2A|G|301
*
8VTY|1|2A|C|316
8VTY|1|2A|G|317
8VTY|1|2A|C|318
8VTY|1|2A|C|319
8VTY|1|2A|A|320
8VTY|1|2A|G|321
8VTY|1|2A|A|322
8VTY|1|2A|G|323
8VTY|1|2A|A|324
8VTY|1|2A|G|325
*
8VTY|1|2A|C|337
8VTY|1|2A|G|338
8VTY|1|2A|U|339
8VTY|1|2A|A|340
8VTY|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24