J3_8VUP_022

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VUP|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VUP_022 not in the Motif Atlas

Homologous match to J3_8B0X_004

Geometric discrepancy: 0.1682

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8VUP|1|2|C|826
8VUP|1|2|U|827
8VUP|1|2|U|828
8VUP|1|2|G|829
*
8VUP|1|2|C|857
8VUP|1|2|G|858
8VUP|1|2|G|859
8VUP|1|2|A|860
8VUP|1|2|G|861
*
8VUP|1|2|C|868
8VUP|1|2|G|869
8VUP|1|2|U|870
8VUP|1|2|U|871
8VUP|1|2|A|872
8VUP|1|2|A|873
8VUP|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain z

Small ribosomal subunit protein bS21