3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8VUP|1|2|A|975, 8VUP|1|2|G|976, 8VUP|1|2|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8VUP_025 not in the Motif Atlas
Geometric match to J3_5J7L_006
Geometric discrepancy: 0.2371
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8VUP|1|2|U|955
8VUP|1|2|U|956
8VUP|1|2|U|957
8VUP|1|2|A|958
8VUP|1|2|A|959
8VUP|1|2|U|960
8VUP|1|2|U|961
8VUP|1|2|C|962
*
8VUP|1|2|G|973
8VUP|1|2|A|974
8VUP|1|2|A|975
8VUP|1|2|G|976
8VUP|1|2|A|977
8VUP|1|2|A|978
8VUP|1|2|C|979
8VUP|1|2|C|980
8VUP|1|2|U|981
8VUP|1|2|U|982
8VUP|1|2|A|983
8VUP|1|2|C|984
*
8VUP|1|2|G|1221
8VUP|1|2|G|1222
8VUP|1|2|C|1223
8VUP|1|2|U|1224
8VUP|1|2|A|1225

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain o
30S ribosomal protein S10
Chain r
30S ribosomal protein S13
Chain s
Small ribosomal subunit protein uS14
Chain x
30S ribosomal protein S19

Coloring options:


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