J3_8VUP_028
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VUP_028 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.1601
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VUP|1|2|C|1063
8VUP|1|2|G|1064
8VUP|1|2|U|1065
8VUP|1|2|C|1066
8VUP|1|2|A|1067
8VUP|1|2|G|1068
*
8VUP|1|2|C|1107
8VUP|1|2|G|1108
8VUP|1|2|C|1109
8VUP|1|2|A|1110
8VUP|1|2|A|1111
8VUP|1|2|C|1112
8VUP|1|2|C|1113
*
8VUP|1|2|G|1187
8VUP|1|2|A|1188
8VUP|1|2|U|1189
8VUP|1|2|G|1190
8VUP|1|2|A|1191
8VUP|1|2|C|1192
8VUP|1|2|G|1193
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS3
- Chain j
- 30S ribosomal protein S5
- Chain l
- 30S ribosomal protein S7
- Chain n
- Small ribosomal subunit protein uS9
- Chain o
- 30S ribosomal protein S10
- Chain s
- Small ribosomal subunit protein uS14
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