J3_8VV4_002
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8VV4|1|1|A|504, 8VV4|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VV4_002 not in the Motif Atlas
- Geometric match to J3_5J7L_066
- Geometric discrepancy: 0.0688
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VV4|1|1|G|30
8VV4|1|1|C|31
*
8VV4|1|1|G|474
8VV4|1|1|C|475
8VV4|1|1|G|476
8VV4|1|1|A|477
8VV4|1|1|A|478
8VV4|1|1|A|479
8VV4|1|1|A|480
8VV4|1|1|G|481
8VV4|1|1|A|482
8VV4|1|1|A|483
8VV4|1|1|C|484
*
8VV4|1|1|G|496
8VV4|1|1|A|497
8VV4|1|1|G|498
8VV4|1|1|U|499
8VV4|1|1|G|500
8VV4|1|1|A|501
8VV4|1|1|A|502
8VV4|1|1|A|503
8VV4|1|1|A|504
8VV4|1|1|A|505
8VV4|1|1|G|506
8VV4|1|1|A|507
8VV4|1|1|A|508
8VV4|1|1|C|509
8VV4|1|1|C|510
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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