J3_8VV4_025
3D structure
- PDB id
- 8VV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8VV4|1|2|A|975, 8VV4|1|2|G|976, 8VV4|1|2|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VV4_025 not in the Motif Atlas
- Geometric match to J3_5J7L_006
- Geometric discrepancy: 0.1794
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VV4|1|2|U|955
8VV4|1|2|U|956
8VV4|1|2|U|957
8VV4|1|2|A|958
8VV4|1|2|A|959
8VV4|1|2|U|960
8VV4|1|2|U|961
8VV4|1|2|C|962
*
8VV4|1|2|G|973
8VV4|1|2|A|974
8VV4|1|2|A|975
8VV4|1|2|G|976
8VV4|1|2|A|977
8VV4|1|2|A|978
8VV4|1|2|C|979
8VV4|1|2|C|980
8VV4|1|2|U|981
8VV4|1|2|U|982
8VV4|1|2|A|983
8VV4|1|2|C|984
*
8VV4|1|2|G|1221
8VV4|1|2|G|1222
8VV4|1|2|C|1223
8VV4|1|2|U|1224
8VV4|1|2|A|1225
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- Small ribosomal subunit protein uS14
- Chain x
- 30S ribosomal protein S19
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