J3_8VVP_008
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8VVP|1|WA|A|1615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_008 not in the Motif Atlas
- Geometric match to J3_8P9A_050
- Geometric discrepancy: 0.1613
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8VVP|1|WA|G|1547
8VVP|1|WA|C|1548
8VVP|1|WA|A|1549
8VVP|1|WA|G|1550
*
8VVP|1|WA|C|1582
8VVP|1|WA|G|1583
8VVP|1|WA|U|1584
8VVP|1|WA|A|1585
8VVP|1|WA|G|1586
*
8VVP|1|WA|U|1611
8VVP|1|WA|C|1612
8VVP|1|WA|C|1613
8VVP|1|WA|G|1614
8VVP|1|WA|A|1615
8VVP|1|WA|C|1616
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain FA
- L34
- Chain OA
- eL43
- Chain Q
- eL19
Coloring options: