J3_8VVP_015

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8VVP|1|WA|U|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|A|2553
8VVP|1|WA|G|2554
8VVP|1|WA|A|2555
8VVP|1|WA|U|2556
8VVP|1|WA|G|2557
*
8VVP|1|WA|C|2574
8VVP|1|WA|A|2575
8VVP|1|WA|G|2576
8VVP|1|WA|U|2577
*
8VVP|1|WA|A|2759
8VVP|1|WA|G|2760
8VVP|1|WA|G|2761
8VVP|1|WA|G|2762
8VVP|1|WA|U|2763
8VVP|1|WA|G|2764
8VVP|1|WA|U|2765
8VVP|1|WA|A|2766
8VVP|1|WA|A|2767
8VVP|1|WA|A|2768
8VVP|1|WA|U|2769

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Y

L27