J3_8VVP_016

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_016 not in the Motif Atlas

Geometric match to J3_8P9A_087

Geometric discrepancy: 0.2673

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVP|1|WA|U|2577
8VVP|1|WA|G|2578
*
8VVP|1|WA|C|2587
8VVP|1|WA|G|2588
8VVP|1|WA|A|2589
8VVP|1|WA|C|2590
8VVP|1|WA|C|2591
*
8VVP|1|WA|G|2758
8VVP|1|WA|A|2759

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Y

L27