J3_8VVP_018

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

8VVP|1|WA|G|4078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_018 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1864

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VVP|1|WA|C|3939
8VVP|1|WA|G|3940
8VVP|1|WA|G|3941
*
8VVP|1|WA|C|4076
8VVP|1|WA|U|4077
8VVP|1|WA|G|4078
8VVP|1|WA|A|4079
8VVP|1|WA|C|4080
*
8VVP|1|WA|G|4170
8VVP|1|WA|G|4171
8VVP|1|WA|A|4172
8VVP|1|WA|C|4173
8VVP|1|WA|A|4174
8VVP|1|WA|G|4175

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL3

Chain G

L7A

Chain M

L15