J3_8VVP_019
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8VVP|1|WA|C|4118, 8VVP|1|WA|U|4119, 8VVP|1|WA|U|4120, 8VVP|1|WA|C|4121, 8VVP|1|WA|U|4122, 8VVP|1|WA|G|4123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_019 not in the Motif Atlas
- Geometric match to J3_8CRE_020
- Geometric discrepancy: 0.2315
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8VVP|1|WA|G|4093
8VVP|1|WA|G|4094
8VVP|1|WA|G|4095
8VVP|1|WA|G|4096
*
8VVP|1|WA|C|4116
8VVP|1|WA|G|4117
8VVP|1|WA|C|4118
8VVP|1|WA|U|4119
8VVP|1|WA|U|4120
8VVP|1|WA|C|4121
8VVP|1|WA|U|4122
8VVP|1|WA|G|4123
8VVP|1|WA|G|4124
8VVP|1|WA|C|4125
8VVP|1|WA|G|4126
8VVP|1|WA|C|4127
8VVP|1|WA|C|4128
8VVP|1|WA|A|4129
8VVP|1|WA|A|4130
8VVP|1|WA|G|4131
*
8VVP|1|WA|C|4157
8VVP|1|WA|G|4158
8VVP|1|WA|A|4159
8VVP|1|WA|C|4160
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain BA
- eL30
- Chain FA
- L34
- Chain G
- L7A
- Chain OA
- eL43
- Chain Y
- L27
Coloring options: