J3_8VVP_021
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8VVP|1|WA|A|4282, 8VVP|1|WA|A|4284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_021 not in the Motif Atlas
- Geometric match to J3_8P9A_062
- Geometric discrepancy: 0.0735
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VVP|1|WA|C|4243
8VVP|1|WA|U|4244
8VVP|1|WA|C|4245
*
8VVP|1|WA|G|4269
8VVP|1|WA|A|4270
8VVP|1|WA|G|4271
*
8VVP|1|WA|C|4280
8VVP|1|WA|A|4281
8VVP|1|WA|A|4282
8VVP|1|WA|A|4283
8VVP|1|WA|A|4284
8VVP|1|WA|G|4285
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain J
- uL5
- Chain S
- eL21
- Chain SA
- Transfer RNA; tRNA
- Chain XA
- 5S ribosomal RNA; 5S rRNA
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