J3_8VVP_022

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8VVP|1|WA|A|4466, 8VVP|1|WA|U|4467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_022 not in the Motif Atlas

Geometric match to J3_8P9A_063

Geometric discrepancy: 0.0892

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8VVP|1|WA|U|4465
8VVP|1|WA|A|4466
8VVP|1|WA|U|4467
8VVP|1|WA|C|4468
*
8VVP|1|WA|G|4493
8VVP|1|WA|U|4494
8VVP|1|WA|U|4495
*
8VVP|1|WA|A|4509
8VVP|1|WA|C|4510
8VVP|1|WA|U|4511
8VVP|1|WA|A|4512
8VVP|1|WA|A|4513
8VVP|1|WA|U|4514
8VVP|1|WA|A|4515

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain N

uL13

Chain U

L23