J3_8VVP_033
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_033 not in the Motif Atlas
- Geometric match to J3_8P9A_076
- Geometric discrepancy: 0.1258
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|C|1218
8VVP|1|ZA|C|1219
8VVP|1|ZA|A|1220
8VVP|1|ZA|G|1221
*
8VVP|1|ZA|C|1645
8VVP|1|ZA|C|1646
8VVP|1|ZA|A|1647
8VVP|1|ZA|G|1648
8VVP|1|ZA|U|1649
8VVP|1|ZA|A|1650
8VVP|1|ZA|A|1651
*
8VVP|1|ZA|U|1673
8VVP|1|ZA|G|1674
8VVP|1|ZA|A|1675
8VVP|1|ZA|U|1676
8VVP|1|ZA|U|1677
8VVP|1|ZA|A|1678
8VVP|1|ZA|A|1679
8VVP|1|ZA|G|1680
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain CC
- S28
- Chain FB
- S5
- Chain QB
- uS9
- Chain TA
- Transfer RNA; tRNA
Coloring options: