J3_8VVP_036

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

8VVP|1|ZA|G|1274, 8VVP|1|ZA|G|1507, 8VVP|1|ZA|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|C|1273
8VVP|1|ZA|G|1274
8VVP|1|ZA|G|1275
8VVP|1|ZA|A|1276
8VVP|1|ZA|C|1277
*
8VVP|1|ZA|G|1320
8VVP|1|ZA|G|1321
8VVP|1|ZA|G|1322
8VVP|1|ZA|U|1323
8VVP|1|ZA|G|1324
*
8VVP|1|ZA|U|1504
8VVP|1|ZA|U|1505
8VVP|1|ZA|A|1506
8VVP|1|ZA|G|1507
8VVP|1|ZA|A|1508
8VVP|1|ZA|U|1509
8VVP|1|ZA|G|1510

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain KB

S10