J3_8VVQ_006

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VVQ|1|WA|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|451
8VVQ|1|WA|A|452
8VVQ|1|WA|G|453
8VVQ|1|WA|U|454
8VVQ|1|WA|C|455
*
8VVQ|1|WA|G|702
8VVQ|1|WA|U|703
8VVQ|1|WA|G|704
8VVQ|1|WA|C|705
8VVQ|1|WA|G|706
*
8VVQ|1|WA|C|1294
8VVQ|1|WA|G|1295
8VVQ|1|WA|A|1296
8VVQ|1|WA|U|1297
8VVQ|1|WA|G|1298

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain E

L6

Chain EA

eL33

Chain PA

L28