J3_8VVQ_019
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8VVQ|1|WA|C|4118, 8VVQ|1|WA|U|4119, 8VVQ|1|WA|U|4120, 8VVQ|1|WA|G|4123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVQ|1|WA|G|4093
8VVQ|1|WA|G|4094
8VVQ|1|WA|G|4095
8VVQ|1|WA|G|4096
*
8VVQ|1|WA|C|4116
8VVQ|1|WA|G|4117
8VVQ|1|WA|C|4118
8VVQ|1|WA|U|4119
8VVQ|1|WA|U|4120
8VVQ|1|WA|C|4121
8VVQ|1|WA|U|4122
8VVQ|1|WA|G|4123
8VVQ|1|WA|G|4124
8VVQ|1|WA|C|4125
8VVQ|1|WA|G|4126
8VVQ|1|WA|C|4127
8VVQ|1|WA|C|4128
8VVQ|1|WA|A|4129
8VVQ|1|WA|A|4130
8VVQ|1|WA|G|4131
*
8VVQ|1|WA|C|4157
8VVQ|1|WA|G|4158
8VVQ|1|WA|A|4159
8VVQ|1|WA|C|4160
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain BA
- eL30
- Chain FA
- L34
- Chain G
- L7A
- Chain OA
- eL43
- Chain Y
- L27
Coloring options: