J3_8VVQ_024

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU*GCUUCUGGG*CACAAGG

Length

19 nucleotides

Bulged bases

8VVQ|1|WA|U|4991, 8VVQ|1|WA|C|4992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|4972
8VVQ|1|WA|A|4973
8VVQ|1|WA|U|4974
*
8VVQ|1|WA|G|4988
8VVQ|1|WA|C|4989
8VVQ|1|WA|U|4990
8VVQ|1|WA|U|4991
8VVQ|1|WA|C|4992
8VVQ|1|WA|U|4993
8VVQ|1|WA|G|4994
8VVQ|1|WA|G|4995
8VVQ|1|WA|G|4996
*
8VVQ|1|WA|C|5059
8VVQ|1|WA|A|5060
8VVQ|1|WA|C|5061
8VVQ|1|WA|A|5062
8VVQ|1|WA|A|5063
8VVQ|1|WA|G|5064
8VVQ|1|WA|G|5065

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31

Chain O

uL22