J3_8VVQ_030

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVQ_030 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.1818

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVQ|1|ZA|A|816
8VVQ|1|ZA|G|817
8VVQ|1|ZA|A|818
8VVQ|1|ZA|G|819
*
8VVQ|1|ZA|C|829
8VVQ|1|ZA|A|830
8VVQ|1|ZA|G|831
*
8VVQ|1|ZA|C|843
8VVQ|1|ZA|U|844
8VVQ|1|ZA|G|845
8VVQ|1|ZA|G|846
8VVQ|1|ZA|A|847
8VVQ|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24