J3_8VVR_012

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

8VVR|1|WA|U|2790, 8VVR|1|WA|A|2791, 8VVR|1|WA|U|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVR_012 not in the Motif Atlas

Geometric match to J3_8P9A_054

Geometric discrepancy: 0.1669

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VVR|1|WA|G|2404
8VVR|1|WA|A|2405
8VVR|1|WA|A|2406
8VVR|1|WA|G|2407
*
8VVR|1|WA|C|2787
8VVR|1|WA|C|2788
8VVR|1|WA|A|2789
8VVR|1|WA|U|2790
8VVR|1|WA|A|2791
8VVR|1|WA|U|2792
8VVR|1|WA|C|2793
*
8VVR|1|WA|G|2802
8VVR|1|WA|U|2803
8VVR|1|WA|C|2804

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain IA

L37

Chain KA

eL39