J3_8VVR_037
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8VVR|1|ZA|U|1535, 8VVR|1|ZA|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVR_037 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.1497
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8VVR|1|ZA|C|1532
8VVR|1|ZA|A|1533
8VVR|1|ZA|C|1534
8VVR|1|ZA|U|1535
8VVR|1|ZA|G|1536
*
8VVR|1|ZA|C|1597
8VVR|1|ZA|G|1598
8VVR|1|ZA|U|1599
8VVR|1|ZA|G|1600
8VVR|1|ZA|A|1601
8VVR|1|ZA|U|1602
8VVR|1|ZA|G|1603
8VVR|1|ZA|G|1604
*
8VVR|1|ZA|C|1635
8VVR|1|ZA|G|1636
8VVR|1|ZA|A|1637
8VVR|1|ZA|G|1638
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain FB
- S5
- Chain SB
- S18
- Chain TA
- Transfer RNA; tRNA
- Chain TB
- S19
- Chain ZB
- eS25
Coloring options: