J3_8VVS_026

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*UAAGAG*CAUUA

Length

14 nucleotides

Bulged bases

8VVS|1|ZA|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVS_026 not in the Motif Atlas

Geometric match to J3_8CRE_074

Geometric discrepancy: 0.155

The information below is about J3_8CRE_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|U|682
8VVS|1|ZA|G|683
8VVS|1|ZA|G|684
*
8VVS|1|ZA|U|918
8VVS|1|ZA|A|919
8VVS|1|ZA|A|920
8VVS|1|ZA|G|921
8VVS|1|ZA|A|922
8VVS|1|ZA|G|923
*
8VVS|1|ZA|C|1019
8VVS|1|ZA|A|1020
8VVS|1|ZA|U|1021
8VVS|1|ZA|U|1022
8VVS|1|ZA|A|1023

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BC

S27

Chain HB

eS7

Chain LB

S11

Chain NB

uS15

Chain WB

S15A

Chain XB

S23