J3_8VVS_035

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

8VVS|1|ZA|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVS_035 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.183

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8VVS|1|ZA|U|1350
8VVS|1|ZA|G|1351
*
8VVS|1|ZA|U|1360
8VVS|1|ZA|G|1361
8VVS|1|ZA|U|1362
8VVS|1|ZA|C|1363
*
8VVS|1|ZA|G|1375
8VVS|1|ZA|A|1376
8VVS|1|ZA|U|1377
8VVS|1|ZA|A|1378
8VVS|1|ZA|A|1379

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain CB

eS1

Chain RB

eS17