Motif J3_76043.7 Version J3_76043.7 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2	break		3		4		5		6	break		7		8		9		10		11	1-4	1-11	2-3	2-10	6-7
1	J3_9PN5_040	9PN5	0.0841	0	B5	SSU rRNA	U	1293	G	1294	*	U	1303	G	1304	U	1305	C	1306	*	G	1318	A	1319	U	1320	A	1321	A	1322		cWW	cWW	ntsS	cWW
2	J3_9H3G_040	9H3G	0.0830	0	h1	SSU rRNA	U	1294	G	1295	*	U	1304	G	1305	PSU	1306	C	1307	*	G	1319	U	1320	U	1321	A	1322	A	1323		cWW	cWW	tsS	cWW
3	J3_8GLP_047	8GLP	0.0681	0	S2	SSU rRNA	U	1350	G	1351	*	U	1360	G	1361	U	1362	C	1363	*	G	1375	A	1376	U	1377	A	1378	A	1379	ntHS	cWW	cWW	tsS	cWW
4	J3_9SUM_037	9SUM	0.0000	0	CA	SSU rRNA	U	1263	G	1264	*	U	1273	G	1274	U	1275	C	1276	*	G	1288	A	1289	U	1290	A	1291	A	1292		cWW	cWW	tsS	cWW
5	J3_8CRE_083	8CRE	0.0728	0	CM	SSU rRNA	U	1278	G	1279	*	U	1288	G	1289	U	1290	C	1291	*	G	1303	A	1304	U	1305	A	1306	A	1307		cWW	cWW	ntsS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGUGUCGAUAA	4
UGUG(PSU)CGUUAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAUA	4
G(PSU)UUA	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cWW-tSS-F-F-F-F-cWW
Heat map statistics: Min 0.07 | Avg 0.07 | Max 0.10

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Coloring options: Nucleotide numbers

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