J3_8VVT_001

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8VVT|1|WA|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|112
8VVT|1|WA|A|113
8VVT|1|WA|G|114
8VVT|1|WA|C|115
8VVT|1|WA|G|116
*
8VVT|1|WA|C|155
8VVT|1|WA|G|156
8VVT|1|WA|U|157
8VVT|1|WA|A|158
8VVT|1|WA|C|159
8VVT|1|WA|G|160
*
8VVT|1|WA|C|275
8VVT|1|WA|C|276
8VVT|1|WA|G|277
8VVT|1|WA|G|278

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

eL8

Chain GA

uL29

Chain HA

L36

Chain K

eL13

Chain M

L15