J3_8VVT_005

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VVT|1|WA|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|451
8VVT|1|WA|A|452
8VVT|1|WA|G|453
8VVT|1|WA|U|454
8VVT|1|WA|C|455
*
8VVT|1|WA|G|702
8VVT|1|WA|U|703
8VVT|1|WA|G|704
8VVT|1|WA|C|705
8VVT|1|WA|G|706
*
8VVT|1|WA|C|1298
8VVT|1|WA|G|1299
8VVT|1|WA|A|1300
8VVT|1|WA|U|1301
8VVT|1|WA|G|1302

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

eL32

Chain E

L6

Chain EA

eL33

Chain PA

eL28