J3_8VVT_018
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 8VVT|1|WA|C|4342, 8VVT|1|WA|U|4379
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_018 not in the Motif Atlas
- Geometric match to J3_8CRE_021
- Geometric discrepancy: 0.0949
- The information below is about J3_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVT|1|WA|G|4233
8VVT|1|WA|U|4234
8VVT|1|WA|C|4235
*
8VVT|1|WA|G|4336
8VVT|1|WA|C|4337
8VVT|1|WA|C|4338
8VVT|1|WA|U|4339
8VVT|1|WA|5MC|4340
8VVT|1|WA|A|4341
8VVT|1|WA|C|4342
8VVT|1|WA|G|4343
8VVT|1|WA|A|4344
8VVT|1|WA|U|4345
8VVT|1|WA|C|4346
8VVT|1|WA|C|4347
*
8VVT|1|WA|OMG|4375
8VVT|1|WA|MHG|4376
8VVT|1|WA|U|4377
8VVT|1|WA|G|4378
8VVT|1|WA|U|4379
8VVT|1|WA|C|4380
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain NA
- eL42
- Chain P
- eL18
- Chain S
- eL21
- Chain Z
- uL15
Coloring options: