J3_8VVT_021

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8VVT|1|WA|U|4887, 8VVT|1|WA|A|4943, 8VVT|1|WA|C|4945, 8VVT|1|WA|A|4948, 8VVT|1|WA|C|4949, 8VVT|1|WA|U|4955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|4754
8VVT|1|WA|G|4755
8VVT|1|WA|G|4756
8VVT|1|WA|U|4757
8VVT|1|WA|U|4758
8VVT|1|WA|G|4759
*
8VVT|1|WA|C|4884
8VVT|1|WA|C|4885
8VVT|1|WA|U|4886
8VVT|1|WA|U|4887
8VVT|1|WA|C|4888
*
8VVT|1|WA|G|4941
8VVT|1|WA|C|4942
8VVT|1|WA|A|4943
8VVT|1|WA|C|4944
8VVT|1|WA|C|4945
8VVT|1|WA|G|4946
8VVT|1|WA|C|4947
8VVT|1|WA|A|4948
8VVT|1|WA|C|4949
8VVT|1|WA|G|4950
8VVT|1|WA|U|4951
8VVT|1|WA|U|4952
8VVT|1|WA|C|4953
8VVT|1|WA|G|4954
8VVT|1|WA|U|4955
8VVT|1|WA|G|4956

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain EA

eL33

Chain L

L14

Chain N

uL13