J3_8VVT_024

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAGAAUU*ACACU

Length

14 nucleotides

Bulged bases

8VVT|1|YA|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|YA|A|44
8VVT|1|YA|C|45
*
8VVT|1|YA|G|58
8VVT|1|YA|A|59
8VVT|1|YA|G|60
8VVT|1|YA|A|61
8VVT|1|YA|A|62
8VVT|1|YA|U|63
8VVT|1|YA|U|64
*
8VVT|1|YA|A|95
8VVT|1|YA|C|96
8VVT|1|YA|A|97
8VVT|1|YA|C|98
8VVT|1|YA|U|99

Current chains

Chain YA

5.8S rRNA

Nearby chains

Chain GA

uL29

Chain IA

L37

Chain KA

eL39

Chain W

uL23

Chain WA

Large subunit ribosomal RNA; LSU rRNA