J3_8VVU_002
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8VVU|1|WA|U|354, 8VVU|1|WA|A|362, 8VVU|1|YA|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVU_002 not in the Motif Atlas
- Geometric match to J3_8CRE_004
- Geometric discrepancy: 0.0956
- The information below is about J3_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8VVU|1|WA|C|351
8VVU|1|WA|G|352
8VVU|1|WA|A|353
8VVU|1|WA|U|354
8VVU|1|WA|A|355
8VVU|1|WA|G|356
8VVU|1|WA|U|357
8VVU|1|WA|C|358
8VVU|1|WA|A|359
8VVU|1|WA|A|360
8VVU|1|WA|C|361
8VVU|1|WA|A|362
8VVU|1|WA|A|363
8VVU|1|WA|G|364
8VVU|1|WA|U|365
8VVU|1|WA|A|366
8VVU|1|WA|C|367
*
8VVU|1|WA|G|374
8VVU|1|WA|G|375
8VVU|1|WA|A|376
8VVU|1|WA|A|377
8VVU|1|WA|A|378
8VVU|1|WA|G|379
*
8VVU|1|YA|C|21
8VVU|1|YA|U|22
8VVU|1|YA|C|23
8VVU|1|YA|G|24
Current chains
- Chain WA
- 28S rRNA
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain C
- uL4
- Chain IA
- L37
- Chain KA
- eL39
- Chain X
- L26
Coloring options: