J3_8VVU_023

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8VVU|1|WA|U|4991, 8VVU|1|WA|C|4992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|4972
8VVU|1|WA|A|4973
8VVU|1|WA|U|4974
*
8VVU|1|WA|G|4988
8VVU|1|WA|C|4989
8VVU|1|WA|U|4990
8VVU|1|WA|U|4991
8VVU|1|WA|C|4992
8VVU|1|WA|U|4993
*
8VVU|1|WA|A|5062
8VVU|1|WA|A|5063
8VVU|1|WA|G|5064
8VVU|1|WA|G|5065

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31

Chain O

uL22