J3_8VVU_026

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVU_026 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.1512

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVU|1|ZA|A|40
8VVU|1|ZA|G|41
*
8VVU|1|ZA|C|481
8VVU|1|ZA|G|482
8VVU|1|ZA|C|483
8VVU|1|ZA|A|484
8VVU|1|ZA|A|485
8VVU|1|ZA|A|486
8VVU|1|ZA|U|487
*
8VVU|1|ZA|A|512
8VVU|1|ZA|G|513
8VVU|1|ZA|U|514

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain XB

S23

Chain YB

S24