J3_8VVU_028

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVU_028 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.2344

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVU|1|ZA|A|816
8VVU|1|ZA|G|817
8VVU|1|ZA|A|818
8VVU|1|ZA|G|819
*
8VVU|1|ZA|C|829
8VVU|1|ZA|A|830
8VVU|1|ZA|G|831
*
8VVU|1|ZA|C|843
8VVU|1|ZA|U|844
8VVU|1|ZA|G|845
8VVU|1|ZA|G|846
8VVU|1|ZA|A|847
8VVU|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24