J3_8VVV_005

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VVV|1|5|C|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|451
8VVV|1|5|A|452
8VVV|1|5|G|453
8VVV|1|5|U|454
8VVV|1|5|C|455
*
8VVV|1|5|G|702
8VVV|1|5|U|703
8VVV|1|5|G|704
8VVV|1|5|C|705
8VVV|1|5|G|706
*
8VVV|1|5|C|1298
8VVV|1|5|G|1299
8VVV|1|5|A|1300
8VVV|1|5|U|1301
8VVV|1|5|G|1302

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

L6

Chain e

eL32

Chain f

eL33