J3_8VVV_006
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUGCCGCCG*CACGGGG
- Length
- 33 nucleotides
- Bulged bases
- 8VVV|1|5|G|964, 8VVV|1|5|C|972, 8VVV|1|5|G|977, 8VVV|1|5|C|978, 8VVV|1|5|C|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|C|713
8VVV|1|5|C|714
*
8VVV|1|5|G|960
8VVV|1|5|A|961
8VVV|1|5|G|962
8VVV|1|5|G|963
8VVV|1|5|G|964
8VVV|1|5|A|965
8VVV|1|5|G|966
8VVV|1|5|C|967
8VVV|1|5|G|968
8VVV|1|5|A|969
8VVV|1|5|G|970
8VVV|1|5|A|971
8VVV|1|5|C|972
8VVV|1|5|C|973
8VVV|1|5|C|974
8VVV|1|5|G|975
8VVV|1|5|U|976
8VVV|1|5|G|977
8VVV|1|5|C|978
8VVV|1|5|C|979
8VVV|1|5|G|980
8VVV|1|5|C|981
8VVV|1|5|C|982
8VVV|1|5|G|983
*
8VVV|1|5|C|1284
8VVV|1|5|A|1285
8VVV|1|5|C|1286
8VVV|1|5|G|1287
8VVV|1|5|G|1288
8VVV|1|5|G|1289
8VVV|1|5|G|1290
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain E
- L6
- Chain F
- uL30
- Chain e
- eL32
Coloring options: