J3_8VVV_007

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

8VVV|1|5|C|1243, 8VVV|1|5|G|1277, 8VVV|1|5|C|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|988
8VVV|1|5|U|989
8VVV|1|5|C|990
*
8VVV|1|5|G|1076
8VVV|1|5|C|1077
8VVV|1|5|C|1078
8VVV|1|5|G|1079
8VVV|1|5|G|1080
*
8VVV|1|5|C|1242
8VVV|1|5|C|1243
8VVV|1|5|A|1244
8VVV|1|5|C|1245
8VVV|1|5|G|1250
8VVV|1|5|C|1251
8VVV|1|5|G|1252
8VVV|1|5|U|1253
8VVV|1|5|C|1254
8VVV|1|5|C|1255
8VVV|1|5|C|1256
8VVV|1|5|C|1257
8VVV|1|5|C|1258
8VVV|1|5|G|1277
8VVV|1|5|C|1278
8VVV|1|5|G|1279

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

L6

Chain F

uL30

Chain b

eL29