J3_8VVV_010
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 8VVV|1|5|A|1811, 8VVV|1|5|U|1840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_010 not in the Motif Atlas
- Homologous match to J3_8GLP_029
- Geometric discrepancy: 0.1902
- The information below is about J3_8GLP_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVV|1|5|U|1732
8VVV|1|5|U|1733
*
8VVV|1|5|A|1808
8VVV|1|5|G|1809
8VVV|1|5|A|1810
8VVV|1|5|A|1811
8VVV|1|5|G|1812
*
8VVV|1|5|C|1838
8VVV|1|5|G|1839
8VVV|1|5|U|1840
8VVV|1|5|G|1841
8VVV|1|5|G|1842
8VVV|1|5|A|1843
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- eL29
Coloring options: