J3_8VVV_015
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8VVV|1|5|C|2476, 8VVV|1|5|A|2478, 8VVV|1|5|G|2481
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|A|2457
8VVV|1|5|G|2458
8VVV|1|5|A|2459
8VVV|1|5|U|2460
8VVV|1|5|G|2461
8VVV|1|5|G|2462
*
8VVV|1|5|C|2471
8VVV|1|5|G|2472
8VVV|1|5|U|2473
8VVV|1|5|U|2474
8VVV|1|5|C|2475
8VVV|1|5|C|2476
8VVV|1|5|G|2477
8VVV|1|5|A|2478
8VVV|1|5|A|2479
8VVV|1|5|G|2480
8VVV|1|5|G|2481
8VVV|1|5|G|2482
*
8VVV|1|5|C|2507
8VVV|1|5|A|2508
8VVV|1|5|G|2509
8VVV|1|5|C|2510
8VVV|1|5|C|2511
8VVV|1|5|G|2512
8VVV|1|5|A|2513
8VVV|1|5|PSU|2514
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
- Chain X
- uL23
- Chain j
- eL37
Coloring options: