J3_8VVV_020
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8VVV|1|5|C|4122, 8VVV|1|5|U|4123, 8VVV|1|5|U|4124, 8VVV|1|5|G|4127
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|G|4097
8VVV|1|5|G|4098
8VVV|1|5|G|4099
8VVV|1|5|G|4100
*
8VVV|1|5|C|4120
8VVV|1|5|G|4121
8VVV|1|5|C|4122
8VVV|1|5|U|4123
8VVV|1|5|U|4124
8VVV|1|5|C|4125
8VVV|1|5|U|4126
8VVV|1|5|G|4127
8VVV|1|5|G|4128
8VVV|1|5|C|4129
8VVV|1|5|G|4130
8VVV|1|5|C|4131
8VVV|1|5|C|4132
8VVV|1|5|A|4133
8VVV|1|5|A|4134
8VVV|1|5|B8W|4135
*
8VVV|1|5|C|4161
8VVV|1|5|G|4162
8VVV|1|5|A|4163
8VVV|1|5|C|4164
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain Z
- L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: