J3_8VVV_021
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 8VVV|1|5|C|4343, 8VVV|1|5|U|4380
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_021 not in the Motif Atlas
- Geometric match to J3_8CRE_021
- Geometric discrepancy: 0.1878
- The information below is about J3_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVV|1|5|G|4234
8VVV|1|5|U|4235
8VVV|1|5|C|4236
*
8VVV|1|5|G|4337
8VVV|1|5|C|4338
8VVV|1|5|C|4339
8VVV|1|5|U|4340
8VVV|1|5|5MC|4341
8VVV|1|5|A|4342
8VVV|1|5|C|4343
8VVV|1|5|G|4344
8VVV|1|5|A|4345
8VVV|1|5|U|4346
8VVV|1|5|C|4347
8VVV|1|5|C|4348
*
8VVV|1|5|OMG|4376
8VVV|1|5|MHG|4377
8VVV|1|5|U|4378
8VVV|1|5|G|4379
8VVV|1|5|U|4380
8VVV|1|5|C|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
Coloring options: