J3_8VVV_022
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8VVV|1|5|A|4286, 8VVV|1|5|A|4288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_022 not in the Motif Atlas
- Geometric match to J3_8P9A_062
- Geometric discrepancy: 0.1033
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VVV|1|5|C|4247
8VVV|1|5|U|4248
8VVV|1|5|C|4249
*
8VVV|1|5|G|4273
8VVV|1|5|A|4274
8VVV|1|5|G|4275
*
8VVV|1|5|C|4284
8VVV|1|5|A|4285
8VVV|1|5|A|4286
8VVV|1|5|A|4287
8VVV|1|5|A|4288
8VVV|1|5|G|4289
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain J
- uL5
- Chain T
- eL21
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