J3_8VVV_024

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8VVV|1|5|U|4888, 8VVV|1|5|A|4944, 8VVV|1|5|C|4946, 8VVV|1|5|A|4949, 8VVV|1|5|C|4950, 8VVV|1|5|U|4956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|4755
8VVV|1|5|G|4756
8VVV|1|5|G|4757
8VVV|1|5|U|4758
8VVV|1|5|U|4759
8VVV|1|5|G|4760
*
8VVV|1|5|C|4885
8VVV|1|5|C|4886
8VVV|1|5|U|4887
8VVV|1|5|U|4888
8VVV|1|5|C|4889
*
8VVV|1|5|G|4942
8VVV|1|5|C|4943
8VVV|1|5|A|4944
8VVV|1|5|C|4945
8VVV|1|5|C|4946
8VVV|1|5|G|4947
8VVV|1|5|C|4948
8VVV|1|5|A|4949
8VVV|1|5|C|4950
8VVV|1|5|G|4951
8VVV|1|5|U|4952
8VVV|1|5|U|4953
8VVV|1|5|C|4954
8VVV|1|5|G|4955
8VVV|1|5|U|4956
8VVV|1|5|G|4957

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

L6

Chain M

eL14

Chain O

uL13

Chain f

eL33